34 saidx_t
35 binarysearch_lower(const saidx_t *A, saidx_t size, saidx_t value) {  in binarysearch_lower()
36   saidx_t half, i;  in binarysearch_lower()
53 bw_transform(const sauchar_t *T, sauchar_t *U, saidx_t *SA,  in bw_transform()
54              saidx_t n, saidx_t *idx) {  in bw_transform()
55   saidx_t *A, i, j, p, t;  in bw_transform()
112 inverse_bw_transform(const sauchar_t *T, sauchar_t *U, saidx_t *A,  in inverse_bw_transform()
113                      saidx_t n, saidx_t idx) {  in inverse_bw_transform()
114   saidx_t C[ALPHABET_SIZE];  in inverse_bw_transform()
116   saidx_t *B;  in inverse_bw_transform()
117   saidx_t i, p;  in inverse_bw_transform()
129     if((B = (saidx_t *)malloc((size_t)n * sizeof(saidx_t))) == NULL) { return -2; }  in inverse_bw_transform()
161 sufcheck(const sauchar_t *T, const saidx_t *SA,  in sufcheck()
162          saidx_t n, saint_t verbose) {  in sufcheck()
163   saidx_t C[ALPHABET_SIZE];  in sufcheck()
164   saidx_t i, p, q, t;  in sufcheck()
246 _compare(const sauchar_t *T, saidx_t Tsize,  in _compare()
247          const sauchar_t *P, saidx_t Psize,  in _compare()
248          saidx_t suf, saidx_t *match) {  in _compare()
249   saidx_t i, j;  in _compare()
258 saidx_t
259 sa_search(const sauchar_t *T, saidx_t Tsize,  in sa_search()
260           const sauchar_t *P, saidx_t Psize,  in sa_search()
261           const saidx_t *SA, saidx_t SAsize,  in sa_search()
262           saidx_t *idx) {  in sa_search()
263   saidx_t size, lsize, rsize, half;  in sa_search()
264   saidx_t match, lmatch, rmatch;  in sa_search()
265   saidx_t llmatch, lrmatch, rlmatch, rrmatch;  in sa_search()
266   saidx_t i, j, k;  in sa_search()
328 saidx_t
329 sa_simplesearch(const sauchar_t *T, saidx_t Tsize,  in sa_simplesearch()
330                 const saidx_t *SA, saidx_t SAsize,  in sa_simplesearch()
331                 saint_t c, saidx_t *idx) {  in sa_simplesearch()
332   saidx_t size, lsize, rsize, half;  in sa_simplesearch()
333   saidx_t i, j, k, p;  in sa_simplesearch()