Lines Matching refs:scaffIndex
288 int *scaffIndex; member
4445 if (dtd->scaffIndex) { in doProlog()
4446 int *temp = (int *)REALLOC(dtd->scaffIndex, in doProlog()
4450 dtd->scaffIndex = temp; in doProlog()
4464 dtd->scaffIndex[dtd->scaffLevel] = myindex; in doProlog()
4483 && (dtd->scaffold[dtd->scaffIndex[dtd->scaffLevel - 1]].type in doProlog()
4486 dtd->scaffold[dtd->scaffIndex[dtd->scaffLevel - 1]].type in doProlog()
4611 dtd->scaffold[dtd->scaffIndex[dtd->scaffLevel - 1]].type in doProlog()
4671 dtd->scaffold[dtd->scaffIndex[dtd->scaffLevel]].quant = quant; in doProlog()
5682 p->scaffIndex = NULL; in dtdCreate()
5722 ms->free_fcn(p->scaffIndex); in dtdReset()
5723 p->scaffIndex = NULL; in dtdReset()
5759 ms->free_fcn(p->scaffIndex); in dtdDestroy()
5895 newDtd->scaffIndex = oldDtd->scaffIndex; in dtdCopy()
6298 if (!dtd->scaffIndex) { in nextScaffoldPart()
6299 dtd->scaffIndex = (int *)MALLOC(groupSize * sizeof(int)); in nextScaffoldPart()
6300 if (!dtd->scaffIndex) in nextScaffoldPart()
6302 dtd->scaffIndex[0] = 0; in nextScaffoldPart()
6326 CONTENT_SCAFFOLD *parent = &dtd->scaffold[dtd->scaffIndex[dtd->scaffLevel-1]]; in nextScaffoldPart()